Membres
Mourad Elloumi |
|
Identité:
Mourad Elloumi
Maître de conférences en Informatique
à la Faculté des Sciences Economiques et de Gestion de Tunis
Membre de l'Unité de Recherche UTIC
E-mail :
Mourad.Elloumi@fsegt.rnu.tn
Titres universitaires:
• Habilitation
Universitaire en Informatique (Ecole Nationale des Sciences de
l’Informatique (ENSI), Université de Manouba (UM)) : 2003.
Sujet :
Algorithmes d’Analyse de Chaînes de Caractères Codant des
Macromolécules Biologiques.
•
Doctorat en
Informatique (Université d’Aix-Marseille III, France) : 1994. Préparé au sein du Groupe Représentation et Traitement des Connaissances (GRTC)
/ Centre National de la Recherche Scientifique (CNRS),
Marseille, France.
Sujet :
Analyse de Chaînes de Caractères Codant des Macromolécules
Biologiques : Très Honorable.
• Diplôme d’Etudes
Approfondies (DEA) en Automatique et Informatique (Faculté des
Sciences et Techniques de Saint Jérôme, Université
d’Aix-Marseille III, France) : 1989
• Ingénieur Principal
en Informatique (Faculté des Sciences de Tunis (FST), Université
de Tunis-El Manar (UTM)) : 1988
• Diplôme Universitaire des Études Supérieures (FST, UTM) : 1984
Thèmes de recherche:
•
Algorithmique
• Biologie
Moléculaire Computationelle (Computational Molecular Biology)
• Extraction de
Connaissances et Fouille de Données (Knowledge Discovery and
Data Mining)
Publications:
1.
Habilitation
- M. Elloumi,
Algorithmes d’Analyse de Chaînes de Caractères Codant des
Macromolécules Biologiques, Mémoire d’Habilitation Universitaire
en Informatique, ENSI, UM, Octobre 2003.
2.
Doctorat
- M.
Elloumi, Analyse de Chaînes de Caractères Codant des
Macromolécules Biologiques, Mémoire de Thèse de Doctorat en
Informatique, Université d’Aix-Marseille III, France, Juin 1994.
3.
DEA
- M. Elloumi,
Description Structurelle d’une Chaîne et Généralisation d’un
Ensemble de Chaînes, Mémoire de DEA en Automatique et
Informatique, Université d'Aix-Marseille III, France, Juin 1989.
4.
Articles dans des Revues Internationales
- [El Faleh et al. 10b] : T. El Faleh, Th. Lecroq, M. Elloumi,
SMS-Forbid and SMS-H-Forbid: Two Improved Motif Finding Algorithms with Wildcards,
Journal of Computational Biology, Mary Ann Liebert, Inc., New Rochelle,USA (Publisher) : (Soumis, Mai 2010).
- [Ayadi et al. 10b] : W. Ayadi, M. Elloumi, J. K. Hao,
BiMine+:An efficient Algorithm for Discovering Relevant Biclusters of DNA Microarray Data, IEEE/ACM Transactions on Computational Biology and Bioinformatics,
IEEE Computer Society Press, Washington D.C., USA (Publisher) : (Soumis, Avril 2010).
- [Ayadi et al. 10a] : W. Ayadi, M. Elloumi, J. K. Hao,
BicFinder: A Biclustering Algorithm for Microarray Data Analysis, Knowledge and Information Systems, An International Journal,
Springer-Verlag London Ltd., London, United Kingdom (Publisher) : (Accepté, Octobre 2010).
- [Ayadi et al. 09] : W. Ayadi, M. Elloumi, J. K. Hao,
A Biclustering Algorithm Based on a Bicluster Enumeration Tree: Application to DNA Microarray Data, BioData Mining Journal, 2:9,
Springer Science+Business Media, Berlin, Germany (Publish.) : (Décembre 2009).
- [Elloumi et Mokaddem 08b] : M. Elloumi, A. Mokaddem,
A Heuristic Algorithm for the N-LCS Problem, Journal of Applied Mathematics, Statistics and Informatics (JAMSI), Vol. 4, N°1,
The University of Saint Cyril and Metodius, Trnava, Slovak Republic (Publisher) : (Mai 2008), p17-27.
- [Mhamdi
et al. 06] : F. Mhamdi, R. Rakotomalala, M. Elloumi, A
Compromise between N-gram Length and Classifier Characteristics
for Protein Classification,
International Journal of Computer Science and Network Security,
Vol. 6
No.4
: (Avril
2006).
- [Elloumi
et Maddouri 05] : M. Elloumi, M. Maddouri, New Voting
Strategies Designed for the Classification of Nucleic Sequences,
Knowledge and Information Systems, An International Journal,
Vol.
8,
N°1,
Springer-Verlag London Ltd., London, United Kingdom
(Publisher) : (Juillet
2005).
- [Maddouri
et Elloumi 04] : M. Maddouri, M. Elloumi, Encoding of Primary
Structures of Biological Macromolecules within a Data Mining
Perspective, Journal of Computer Science and Technology, Vol.
19, N°1, Special Issue on Bioinformatics, Chinese Academy of
Sciences, Beijing, China (Publisher) : (Janvier 2004).
- [Maddouri
et Elloumi 02] : M. Maddouri, M. Elloumi, A Data Mining Approach
based on Machine Learning Techniques to Classify Biological
Sequences, Knowledge Based Systems Journal, Vol. 15, Issue 4,
Elsevier Publishing Co., Amsterdam, North-Holland (Publisher) :
(Mai 2002), p217-223.
-
[Elloumi
01b] : M. Elloumi, Algorithms for the Prediction of Secondary
Structures of RNA Macromolecules, Journal of Computational
Technologies, Vol. 6, N°5, Siberian Branch, Russian Academy of
Sciences, Novosibirsk, Russia (Publisher) : (Octobre 2001),
p3-23.
- [Elloumi
00d] : M. Elloumi, Algorithms for the Shortest Exact Common
Superstring Problem, South African Computer Journal, N°26,
Computer Society of South Africa, Johannesbourg, South Africa
(Publisher) : (Novembre 2000), p22-26.
- [Elloumi
98b] : M. Elloumi, Comparison of Strings Belonging to the Same
Family, Information Sciences, An International Journal, Vol.
111, Issue 1-4, Elsevier Publishing Co., Amsterdam,
North-Holland (Publisher) : (Novembre 1998), p49-63.
5.
Édition et Co- Édition d’Actes et de Numéros Spéciaux
- Édition du Vol. 15, Issue 4, de la Revue
Knowledge Based Systems,
Numéro
Spécial intitulé Biological
Knowledge Discovery and Data Mining,
Elsevier Publishing Co., Amsterdam, North-Holland (Publisher) :
(Mai 2002).
- Co-Édition
des
Proceedings of The 2001 International Conference on Mathematics
and Engineering Techniques in Medicine and Biological Sciences,
METMBS'01 (Las Vegas, Nevada, U.S.A.) : (Juin 2001).
6. Communications
dans des Conférences Internationales
- [Ayadi et al. 10] : W. Ayadi, M. Elloumi, J. K. Hao,
Iterated Local Search for Biclustering of Microarray Data, in Proc. The 5th Pattern Recognition in Bioinformatics, PRIB’10 (Nijmegen, The Netherlands), Lecture Notes in BioInformatics (LNBI),
Springer-Verlag, Berlin, Heidelberg, Germany (Publish.) : (September 2010).
- [Elloumi et al. 10] : M. Elloumi, F. Mhamdi, W. Trabelsi,
Processus d’Extraction de Motifs Biologiques Pertinents, in Proc.
17ème Rencontres de la Société Francophone de Classification, SFC’10 (Saint Denis, La Réunion, France) : (Juin 2010).
- [El Faleh et al. 10a] : T. El Faleh, Th. Lecroq, M. Elloumi,
SMS-Forbid: An Efficient Algorithm for Simple Motif Problem, in Proc. 2nd International Conference on Bioinformatics and Computational Biology,
BICoB’10 (Honolulu, Hawaii, USA) : (Mars 2010).
- [Mhamdi et Elloumi 09] : F. Mhamdi, M. Elloumi,
lgorithms for Proteins Biclustering, in Proc. The 2009 IEEE International Workshop on Bioinformatics and Life Science Modeling and Computing, BLSMC’09,
(Bradford, UK), IEEE Computer Society Press (Publish.) : (Mai 2009).
- [Elloumi et Mnif 09b] : M. Elloumi, A. Mnif,
New Heuristic Algorithms for the Optimization Vertex Bipartization Problem, in Proc.
The 45th Applied Mathematics Conference, ANZIAM’09 (Caloundra, Australia) : (Février 2009).
- [Elloumi et Mnif 09a] : M. Elloumi, A. Mnif,
New Minimum Fragment Removal Heuristic Algorithms Based on a Coloring Approach, in Proc.
The International Conference on Advanced Computer Control, ICACC’09 (Singapore) : (Janvier 2009).
- [Mhamdi et Elloumi 08b] : F. Mhamdi, M. Elloumi,
Approaches of Feature Construction from Biological Sequences, in Proc. The 3rdPattern Recognition in Bioinformatics, PRIB’08 (Melbourne, Australia ), Lecture Notes in BioInformatics (LNBI),
Springer-Verlag, Berlin, Heidelberg, Germany (Publish.) : (Octobre 2008).
- [Elloumi et Mokaddem 08c] : M. Elloumi, A. Mokaddem,
An Algorithm for Multiple and Global Alignments, in Proc. The 2nd International Conference on Bioinformatics Research and Development,
BIRD’08 (Vienna, Austria), Communications in Computer and Information Science (CCIS), Springer-Verlag, Berlin, Heidelberg, Germany (Publish.) : (Juillet 2008).
- [Tahri et Elloumi 08] : H. Tahri, M. Elloumi,
A New Approximation Algorithm for the Minimum Fragment Removal Problem, in Proc. The 2nd International Conference on Bioinformatics Research and Development,
BIRD’08 (Vienna, Austria), Communications in Computer and Information Science (CCIS), Springer-Verlag, Berlin, Heidelberg, Germany (Publish.) : (Juillet 2008).
- [Mhamdi
et Elloumi 08] : F. Mhamdi, M. Elloumi,
A New
Survey on Knowledge Discovery and Data Mining,
in
Proc. The Second IEEE International Conference on Research
Challenges in Information Science, IEEE-RCIS’08 (Marrakech,
Morocco) : (Juin 2008).
- [Elloumi
et Mokaddem 08a] : M. Elloumi, A. Mokaddem, An Approximation
Algorithm for the N-LCS Problem,
in The 2nd International Conference on Bioinformatics
and Biomedical Engineering, iCBBE’08
(Shanghai, China),
IEEE
Press
(Publish.) : (Mai 2008).
- [Elloumi
et Mokaddem 08b] : M. Elloumi, A. Mokaddem,
An
Algorithm for Multiple and Global Alignments,
in
The
2008 IEEE International Workshop on Bioinformatics and Life
Science Modeling and Computing,
BLSMC’08 (GinoWan, Okinawa, Japan),IEEE
CS Press
(Publish.) : (Mars 2008).
- [Elloumi
et Mokaddem 08c] : M. Elloumi, A. Mokaddem,
A
Dynamic Programming Algorithm for the Approximate
String-Matching Problem,
in
The
2008 IEEEInternational Workshop on Bioinformatics and Life
Science Modeling and Computing,
BLSMC’08 (GinoWan, Okinawa, Japan),
IEEE
CS Press
(Publish.) : (Mars 2008).
- [Mhamdi
et al. 07] : F. Mhamdi, R. Rakotomalala, M. Elloumi, Une
Approche Hiérarchique d’Extraction de Motifs pour la
Classification de Protéines, in Proc. Conférence d'Apprentissage
Automatique, CAp'07 (Grenoble, France) : (Juillet 2007).
- [Mhamdi
et al. 06b] : F. Mhamdi, R. Rakotomalala, M. Elloumi, A
Hierarchical N-Grams Extraction Approach for Classification
Problem, in Proc.
The International Conference on Signal-Image Technology &
Internet–Based Systems, SITIS'06 (Tunis, Tunisia), Springer-Verlag, Heidelberg, Germany
(Eds.) :(Décembre 2006).
-
[Elloumi
06] : M. Elloumi,
Algorithms for Processing Biological Sequences,
in Proc. 1st Tunisian-German Workshop on
Bioinformatics (Borj-Cédria, Tunisia) : (Septembre 2006).
-
[Tahri et Elloumi 06] : H. Tahri, M. Elloumi, Algorithms for the
Single Individual Haplotyping Problem, in Proc. 1st Tunisian-German Workshop on Bioinformatics (Borj-Cédria,
Tunisia) : (Septembre 2006).
- [Mhamdi et al. 06a] : F. Mhamdi, M. Elloumi, R. Rakotomalala,
Extraction et Sélection des n-grammes pour le Classement des
Protéines, in Proc. Atelier Extraction et Gestion des
Connaissances Appliquées aux Données Biologiques, BIO-EGC'06
(Lille, France) : (Janvier 2006).
-
[Rakotomalala et
al. 05] : R. Rakotomalala, F. Mhamdi, M. Elloumi, Hybrid
Feature Ranking for Proteins Classification, in Proc.
The
First International Conference on
Advanced Data Mining and Applications, ADMA'05 (Wuhan,
China), Lecture Notes in Computer Science,
Springer-Verlag, Heidelberg, Germany (Eds.) : (Juillet 2005).
- [Mhamdi
et al. 05b] : F. Mhamdi, M. Maddouri, M. Elloumi, Extraction et
Comparaison entre N-Grammes et Descripteurs Discriminants pour
la Classification de Protéines, in Proc. Conférence
d'Apprentissage Automatique, CAp'05 (Nice, France) : (Mai 2005).
- [Mhamdi
et al. 05a] : F. Mhamdi, R. Rakotomalala, M. Elloumi, Feature
Ranking for Protein Classification, in Proc. 4th International Conference on Computer Recognition Systems,
CORES'05 (Leszno, Poland), Springer-Verlag, Heidelberg, Germany
(Eds.) : (Mai 2005).
- [Mhamdi
et al. 04b] : F. Mhamdi, M. Elloumi, R. Rakotomalala,
Discriminant Descriptors Extraction for Proteins Classification,
in Proc.
Neuro-Computing
and Evolving Intelligence 2004, NCEI’04
(Auckland, New Zealand) : (Décembre 2004).
- [Mhamdi
et al. 04a] : F. Mhamdi, M. Elloumi, R.
Rakotomalala,
Textmining, Feature Selection and Datamining for Protein
Classification, in Proc. IEEE International Conference on
Information & Communication Technologies from Theory to
Applications, IEEE-ICTTA'04
(Damascus, Syria) : (Avril 2004).
- [Elloumi
et Maddouri 03] : M. Elloumi, M. Maddouri, A Data Mining
Approach based on Vote Strategies to Classify Biological
Sequences, in Proc. Workshop on Discrete Mathematics and Data
Mining (DM&DM), Third Society for Industrial and Applied
Mathematics (SIAM) International Conference on Data Mining
(San Francisco, California, U.S.A.) : (Mai 2003).
- [Maddouri
et Elloumi 01] : M. Maddouri, M. Elloumi, Classification of
Biological Sequences by using a Data Mining Approach, in Proc.
of The 2001 International Conference on Mathematics and
Engineering Techniques in Medicine and Biological Sciences,
METMBS'01 (Las Vegas, Nevada, U.S.A.) : (Juin 2001).
- [Elloumi
01a] : M. Elloumi, An Algorithm for the Approximate
String-Matching Problem, in Proc. of Atlantic Symposium on
Computational Biology, Genome Information Systems & Technology,
CBGI'01 (Durham, North Carolina, U.S.A.) : (Mars 2001).
- [Elloumi
00c] : M. Elloumi, Algorithms for the Shortest Approximate
Common Superstring Problem, in Proc. of The 1st Society
for Industrial and Applied Mathematics Conference on
Computational Science and Engineering, SIAM-CS&I'00
(Washington D.C., U.S.A.) : (Septembre 2000).
- [Elloumi
00b] : M. Elloumi, Algorithms for the DNA Sequence Assembly
Problem, in Proc. of 4th World
Conference on Systematics, Cybernetics and Informatics, and 6th International
Conference on Information Systems Analysis and Synthesis,
SCI2000/ISAS2000, Session : SCI in Biology and Medicine (Orlando,
Florida, U.S.A.), International Institute of Informatics and
Systemics, Illinois, U.S.A. (Eds.) : (Juillet 2000).
- [Elloumi
00a] : M. Elloumi, DNA Sequence Assembly Algorithms Based on
Clustering Approaches, in Proc. of The 2000 International
Conference on Mathematics and Engineering Techniques in Medicine
and Biological Sciences, METMBS'00, Vol. II (Las Vegas, Nevada,
U.S.A.) : (Juin 2000), p717-723.
- [Elloumi
et Maddouri 00] : M. Elloumi, M. Maddouri, Discrimination
Between Two Families of Strings: Application to Classification
of Primary Structures of Biological Macromolecules, in Proc. of
2nd International
Workshop on Biological Informatics, BIW'2000, Vol. II (Atlantic
City, New Jersey, U.S.A.) : (Février 2000), p819-822.
- [Barouni
et Elloumi 00] : A. Barouni, M. Elloumi, An Algorithm for
Drawing Normal Representation of RNA Secondary Structures, in
Proc. of 2nd International
Workshop on Biological Informatics, BIW'2000 Vol. II (Atlantic
City, New Jersey, U.S.A.) : (Février 2000), p766-769.
- [Elloumi
et Kaâbi 99] : M. Elloumi, S. Kaâbi, Exact and Approximation
Algorithms for the DNA Sequence Assembly Problem, in Proc. of 3rd World
Conference on Systematics, Cybernetics and Informatics, and 5th International
Conference on Information Systems Analysis and Synthesis,
SCI'99/ISAS'99, Session : SCI in Biology and Medicine, Vol. 8 (Orlando,
Florida, U.S.A.), International Institute of Informatics and
Systemics, Illinois, U.S.A. (Eds.) : (Juillet 1999), p152-157.
- [Elloumi
et Kaâbi 98] : M. Elloumi, S. Kaâbi, DNA Sequence Assembly
Algorithms, in Proc. of 2nd Workshop
on Intelligent Control Systems, IC'98 (North Carolina, U.S.A.) :
(Octobre 1998).
- [Elloumi
98a] : M. Elloumi, New Algorithms to Predict Secondary
Structures of RNA Macromolecules, in Proc. of 11th International
Conference on Industrial and Engineering Applications of
Artificial Intelligence and Expert Systems, IEA/AIE'98, Vol. 1 (Benicassim,
Castellon, Spain), Springer Lecture Notes in Artificial
Intelligence, Springer-Verlag, New York, U.S.A. (Eds.) : (Juin
1998), p864-875.
7. Chapitres dans un Livre
- [Ayadi et Elloumi 10] : W. Ayadi, M. Elloumi,
Biclustering of Microarray Data, in Algorithms in Computational Molecular Biology : Techniques, Approaches and Applications, Wiley Book Series on Bioinformatics : Computational Techniques and Engineering, Wiley-Blackwell, John Wiley & Sons Ltd., New Jersey,
USA (Publish.) : (Octobre 2010).
- [El Faleh et al. 10c] : T. El Faleh, M. Elloumi,
h. Lecroq, Motif Finding Algorithms in Biological Sequences, in Algorithms in Computational Molecular Biology : Techniques, Approaches and Applications, Wiley Book Series on Bioinformatics : Computational Techniques and Engineering, Wiley-Blackwell, John Wiley & Sons Ltd., New Jersey,
USA (Publish.) : (Octobre 2010).
- [Mokaddem et Elloumi 10] : A. Mokaddem, M. Elloumi,
Algorithms for the Alignment of Biological Sequences, in Algorithms in Computational Molecular Biology : Techniques, Approaches and Applications, Wiley Book Series on Bioinformatics : Computational Techniques and Engineering, Wiley-Blackwell, John Wiley & Sons Ltd., New Jersey,
USA (Publish.) : (Octobre 2010).
|