Members Mourad Elloumi

Identity:

Mourad Elloumi

Professor in Computer Science,
Faculty of Economic Sciences and Management of Tunis

Member of research Unit UTIC

E-mail : Mourad.Elloumi@fsegt.rnu.tn

Academic qualifications:

• Habilitation for Conducting Research in Computer Science (National School of Computer Science (NSCS), University of Manouba (UM), Tunisia) : 2003.

   

  Subject : Algorithms of Analysis of Strings Coding Biological Macromolecules.

• PhD in Computer Science (University of Aix-Marseilles III, France) : 1994. Prepared within the Group Representation and Processing of Knowledge (GRPK) / National Centre of Scientific Research (NCSR), Marseilles, France

   

  Subject : Analysis of Strings Coding Biological Macromolecules.

• Master in Computer Science (Faculty of Sciences and Techniques of Saint Jérôme, University of Aix-Marseilles III, France) : 1989

• Engineer in Computer Science (Faculty of Sciences of Tunis (FST), University of Tunis-El Manar (UTM), Tunisia) : 1988

• Undergraduate Degree in Mathematics and Physics (FST, UTM) : 1984

Research Topics:

• Algorithmic

• Computational Molecular Biology  

• Knowledge Discovery and Data Mining

Publications:

1. Habilitation

• M. Elloumi, Algorithms of Analysis of Strings Coding Biological Macromolecules, Habilitation Dissertation in Computer Science, NSCS, UM, October 2003.

2. PhD

• M. Elloumi, Analysis of Strings Coding Biological Macromolecules, PhD Dissertation in Computer Science, University of Aix-Marseilles III, France, June 1994.

3. Master

• M. Elloumi, Structural Description of a String and Generalization of a Set of Strings, Master Dissertation in Computer Science, University of Aix-Marseilles III, France, June 1989.

4. Papers in International Journals

• [El Faleh et al. 10b] : T. El Faleh, Th. Lecroq, M. Elloumi, SMS-Forbid and SMS-H-Forbid: Two Improved Motif Finding Algorithms with Wildcards, Journal of Computational Biology, Mary Ann Liebert, Inc., New Rochelle,USA (Publisher) : (Soumis, Mai 2010).

• [Ayadi et al. 10b] : W. Ayadi, M. Elloumi, J. K. Hao, BiMine+:An efficient Algorithm for Discovering Relevant Biclusters of DNA Microarray Data, IEEE/ACM Transactions on Computational Biology and Bioinformatics, IEEE Computer Society Press, Washington D.C., USA (Publisher) : (Soumis, Avril 2010).

• [Ayadi et al. 10a] : W. Ayadi, M. Elloumi, J. K. Hao, BicFinder: A Biclustering Algorithm for Microarray Data Analysis, Knowledge and Information Systems, An International Journal, Springer-Verlag London Ltd., London, United Kingdom (Publisher) : (Accepté, Octobre 2010).

• [Ayadi et al. 09] : W. Ayadi, M. Elloumi, J. K. Hao, A Biclustering Algorithm Based on a Bicluster Enumeration Tree: Application to DNA Microarray Data, BioData Mining Journal, 2:9, Springer Science+Business Media, Berlin, Germany (Publish.) : (Décembre 2009).

• [Elloumi et Mokaddem 08b] : M. Elloumi, A. Mokaddem, A Heuristic Algorithm for the N-LCS Problem, Journal of Applied Mathematics, Statistics and Informatics (JAMSI), Vol. 4, N°1, The University of Saint Cyril and Metodius, Trnava, Slovak Republic (Publisher) : (Mai 2008), p17-27.

• [Mhamdi et al. 06] : F. Mhamdi, R. Rakotomalala, M. Elloumi, A Compromise between N-gram Length and Classifier Characteristics for Protein Classification, International Journal of Computer Science and Network Security, Vol. 6 No.4 : (April 2006).

• [Elloumi and Maddouri 05] : M. Elloumi, M. Maddouri, New Voting Strategies Designed for the Classification of Nucleic Sequences, Knowledge and Information Systems, An International Journal, Vol. 8, N°1, Springer-Verlag London Ltd., London, United Kingdom (Publisher) : (July 2005).

• [Maddouri and Elloumi 04] : M. Maddouri, M. Elloumi, Encoding of Primary Structures of Biological Macromolecules within a Data Mining Perspective, Journal of Computer Science and Technology, Vol. 19, N°1, Special Issue on Bioinformatics, Chinese Academy of Sciences, Beijing, China (Publisher) : (January 2004).

• [Maddouri and Elloumi 02] : M. Maddouri, M. Elloumi, A Data Mining Approach based on Machine Learning Techniques to Classify Biological Sequences, Knowledge Based Systems Journal, Vol. 15, Issue 4, Elsevier Publishing Co., Amsterdam, North-Holland (Publisher) : (May 2002), p217-223

• [Elloumi 01b] : M. Elloumi, Algorithms for the Prediction of Secondary Structures of RNA Macromolecules, Journal of Computational Technologies, Vol. 6, N°5, Siberian Branch, Russian Academy of Sciences, Novosibirsk, Russia (Publisher) : (October 2001), p3-23.

• [Elloumi 00d] : M. Elloumi, Algorithms for the Shortest Exact Common Superstring Problem, South African Computer Journal, N°26, Computer Society of South Africa, Johannesbourg, South Africa (Publisher) : (November 2000), p22-26.

• [Elloumi 98b] : M. Elloumi, Comparison of Strings Belonging to the Same Family, Information Sciences, An International Journal, Vol. 111, Issue 1-4, Elsevier Publishing Co., Amsterdam, North-Holland (Publisher) : (November 1998), p49-63.

5. Edition and Co-Edition of Proceedings and Special Issues

• Edition of Vol. 15, Issue 4, of the Journal Knowledge Based Systems, Special Issue entitled Biological Knowledge Discovery and Data Mining, Elsevier Publishing Co., Amsterdam, North-Holland (Publisher) : (May 2002).

• Co-Edition of the Proceedings of The 2001 International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, METMBS'01 (Las Vegas, Nevada, U.S.A.) : (June 2001).

6. Communications in International Conferences

• [Ayadi et al. 10] : W. Ayadi, M. Elloumi, J. K. Hao, Iterated Local Search for Biclustering of Microarray Data, in Proc. The 5th Pattern Recognition in Bioinformatics, PRIB’10 (Nijmegen, The Netherlands), Lecture Notes in BioInformatics (LNBI), Springer-Verlag, Berlin, Heidelberg, Germany (Publish.) : (September 2010).

• [Elloumi et al. 10] : M. Elloumi, F. Mhamdi, W. Trabelsi, Processus d’Extraction de Motifs Biologiques Pertinents, in Proc. 17ème Rencontres de la Société Francophone de Classification, SFC’10 (Saint Denis, La Réunion, France) : (Juin 2010).

• [El Faleh et al. 10a] : T. El Faleh, Th. Lecroq, M. Elloumi, SMS-Forbid: An Efficient Algorithm for Simple Motif Problem, in Proc. 2nd International Conference on Bioinformatics and Computational Biology, BICoB’10 (Honolulu, Hawaii, USA) : (Mars 2010).

• [Mhamdi et Elloumi 09] : F. Mhamdi, M. Elloumi, lgorithms for Proteins Biclustering, in Proc. The 2009 IEEE International Workshop on Bioinformatics and Life Science Modeling and Computing, BLSMC’09, (Bradford, UK), IEEE Computer Society Press (Publish.) : (Mai 2009).

• [Elloumi et Mnif 09b] : M. Elloumi, A. Mnif, New Heuristic Algorithms for the Optimization Vertex Bipartization Problem, in Proc. The 45th Applied Mathematics Conference, ANZIAM’09 (Caloundra, Australia) : (Février 2009).

• [Elloumi et Mnif 09a] : M. Elloumi, A. Mnif, New Minimum Fragment Removal Heuristic Algorithms Based on a Coloring Approach, in Proc. The International Conference on Advanced Computer Control, ICACC’09 (Singapore) : (Janvier 2009).

• [Mhamdi et Elloumi 08b] : F. Mhamdi, M. Elloumi, Approaches of Feature Construction from Biological Sequences, in Proc. The 3rdPattern Recognition in Bioinformatics, PRIB’08 (Melbourne, Australia ), Lecture Notes in BioInformatics (LNBI), Springer-Verlag, Berlin, Heidelberg, Germany (Publish.) : (Octobre 2008).

• [Elloumi et Mokaddem 08c] : M. Elloumi, A. Mokaddem, An Algorithm for Multiple and Global Alignments, in Proc. The 2nd International Conference on Bioinformatics Research and Development, BIRD’08 (Vienna, Austria), Communications in Computer and Information Science (CCIS), Springer-Verlag, Berlin, Heidelberg, Germany (Publish.) : (Juillet 2008).

• [Tahri et Elloumi 08] : H. Tahri, M. Elloumi, A New Approximation Algorithm for the Minimum Fragment Removal Problem, in Proc. The 2nd International Conference on Bioinformatics Research and Development, BIRD’08 (Vienna, Austria), Communications in Computer and Information Science (CCIS), Springer-Verlag, Berlin, Heidelberg, Germany (Publish.) : (Juillet 2008).

• [Mhamdi and Elloumi 08] : F. Mhamdi, M. Elloumi, A New Survey on Knowledge Discovery and Data Mining, in Proc. The Second IEEE International Conference on Research Challenges in Information Science, IEEE-RCIS’08 (Marrakech, Morocco) : (June 2008).

• [Elloumi and Mokaddem 08a] : M. Elloumi, A. Mokaddem, An Approximation Algorithm for the N-LCS Problem, in The 2nd International Conference on Bioinformatics and Biomedical Engineering, iCBBE’08 (Shanghai, China), IEEE Press (Publish.) : (May 2008).

• [Elloumi and Mokaddem 08b] : M. Elloumi, A. Mokaddem, An Algorithm for Multiple and Global Alignments, in The 2008 IEEE International Workshop on Bioinformatics and Life Science Modeling and Computing, BLSMC’08 (GinoWan, Okinawa, Japan),IEEE CS Press (Publish.) : (March 2008).

• [Elloumi and Mokaddem 08c] : M. Elloumi, A. Mokaddem, A Dynamic Programming Algorithm for the Approximate String-Matching Problem, in The 2008 IEEEInternational Workshop on Bioinformatics and Life Science Modeling and Computing, BLSMC’08 (GinoWan, Okinawa, Japan), IEEE CS Press (Publish.) : (March 2008)

• [Mhamdi et al. 07] : F. Mhamdi, R. Rakotomalala, M. Elloumi, Une Approche Hiérarchique d’Extraction de Motifs pour la Classification de Protéines, in Proc. Conférence d'Apprentissage Automatique, CAp'07 (Grenoble, France) : (July 2007).

• [Mhamdi et al. 06b] : F. Mhamdi, R. Rakotomalala, M. Elloumi, A Hierarchical N-Grams Extraction Approach for Classification Problem, in Proc. The International Conference on Signal-Image Technology & Internet–Based Systems, SITIS'06 (Tunis, Tunisia), Springer-Verlag, Heidelberg, Germany (Eds.) :(December 2006).

• [Elloumi 06] : M. Elloumi, Algorithms for Processing Biological Sequences, in Proc. 1st Tunisian-German Workshop on Bioinformatics (Borj-Cédria, Tunisia) : (Septembre 2006).

• [Tahri and Elloumi 06] : H. Tahri, M. Elloumi, Algorithms for the Single Individual Haplotyping Problem, in Proc. 1st Tunisian-German Workshop on Bioinformatics (Borj-Cédria, Tunisia) : (September 2006).

• [Mhamdi et al. 06a] : F. Mhamdi, M. Elloumi, R. Rakotomalala, Extraction et Sélection des n-grammes pour le Classement des Protéines, in Proc. Atelier Extraction et Gestion des Connaissances Appliquées aux Données Biologiques, BIO-EGC'06 (Lille, France) : (January 2006).

• [Rakotomalala et al. 05] : R. Rakotomalala, F. Mhamdi, M. Elloumi,Hybrid Feature Ranking for Proteins Classification, in Proc. The First International Conference on Advanced Data Mining and Applications, ADMA'05 (Wuhan, China), Lecture Notes in Computer Science, Springer-Verlag, Heidelberg, Germany (Eds.) : (July 2005).

• [Mhamdi et al. 05b] : F. Mhamdi, M. Maddouri, M. Elloumi, Extraction et Comparaison entre N-Grammes et Descripteurs Discriminants pour la Classification de Protéines, in         Proc. Conférence d'Apprentissage Automatique, CAp'05 (Nice, France) : (May 2005).

• [Mhamdi et al. 05a] : F. Mhamdi, R. Rakotomalala, M. Elloumi, Feature Ranking for Protein Classification, in Proc. 4th International Conferenceon Computer Recognition Systems, CORES'05 (Leszno, Poland), Springer-Verlag, Heidelberg, Germany (Eds.) :  (May 2005).

• Mhamdi et al. 04b] : F. Mhamdi, M. Elloumi, R. Rakotomalala, Discriminant Descriptors Extraction for Proteins Classification, in Proc. Neuro-Computing and Evolving Intelligence 2004, NCEI’04 (Auckland, New Zealand) : (December 2004).

• [Mhamdi et al. 04a] : F. Mhamdi, M. Elloumi, R. Rakotomalala, Textmining, Feature     Selection and Datamining for Protein Classification, in Proc. IEEE International Conference on Information & Communication Technologies from Theory to Applications, IEEE-ICTTA'04 (Damascus, Syria) : (April 2004).

• [Elloumi and Maddouri 03] : M. Elloumi, M. Maddouri, A Data Mining Approach based on Vote Strategies to Classify Biological Sequences, in Proc. Workshop on Discrete Mathematics and Data Mining (DM&DM), Third Society for Industrial and Applied Mathematics (SIAM) International Conference on Data Mining (San Francisco, California, U.S.A.) : (May 2003).

• [Maddouri and Elloumi 01] : M. Maddouri, M. Elloumi, Classification of Biological Sequences by using a Data Mining Approach, in Proc. of The 2001 International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, METMBS'01 (Las Vegas, Nevada, U.S.A.) : (June 2001).

• [Elloumi 01a] : M. Elloumi, An Algorithm for the Approximate String-Matching Problem, in Proc. of Atlantic Symposium on Computational Biology, Genome Information Systems & Technology, CBGI'01 (Durham, North Carolina, U.S.A.) : (March 2001).

• [Elloumi 00c] : M. Elloumi, Algorithms for the Shortest Approximate Common Superstring Problem, in Proc. of The 1st Society for Industrial and Applied Mathematics Conference on Computational Science and Engineering, SIAM-CS&I'00 (Washington D.C., U.S.A.) : (September 2000).

• [Elloumi 00b] : M. Elloumi, Algorithms for the DNA Sequence Assembly Problem, in Proc. of 4th World Conference on Systematics, Cybernetics and Informatics, and 6th International Conference on Information Systems Analysis and Synthesis, SCI2000/ISAS2000, Session : SCI in Biology and Medicine (Orlando, Florida, U.S.A.), International Institute of Informatics and Systemics, Illinois, U.S.A. (Eds.) : (July 2000).

• [Elloumi 00a] : M. Elloumi, DNA Sequence Assembly Algorithms Based on Clustering Approaches, in Proc. of The 2000 International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, METMBS'00, Vol. II (Las Vegas, Nevada, U.S.A.) : (June 2000), p717-723.

• [Elloumi and Maddouri 00] : M. Elloumi, M. Maddouri, Discrimination Between Two Families of Strings: Application to Classification of Primary Structures of Biological Macromolecules, in Proc. of 2nd International Workshop on Biological Informatics, BIW'2000, Vol. II (Atlantic City, New Jersey, U.S.A.) : (February 2000), p819-822.

• [Barouni and Elloumi 00] : A. Barouni, M. Elloumi, An Algorithm for Drawing Normal Representation of RNA Secondary Structures, in Proc. of 2nd International Workshop on Biological Informatics, BIW'2000 Vol. II (Atlantic City, New Jersey, U.S.A.) : (February 2000), p766-769.

• [Elloumi and Kaâbi 99] : M. Elloumi, S. Kaâbi, Exact and Approximation Algorithms for the DNA Sequence Assembly Problem, in Proc. of 3rd World Conference on Systematics, Cybernetics and Informatics, and 5th International Conference on Information Systems Analysis and Synthesis, SCI'99/ISAS'99, Session : SCI in Biology and Medicine, Vol. 8 (Orlando, Florida, U.S.A.), International Institute of Informatics and Systemics, Illinois, U.S.A. (Eds.) : (July 1999), p152-157.

• [Elloumi and Kaâbi 98] : M. Elloumi, S. Kaâbi, DNA Sequence Assembly Algorithms, in Proc. of 2nd Workshop on Intelligent Control Systems, IC'98 (North Carolina, U.S.A.) : (October 1998).

• [Elloumi 98a] : M. Elloumi, New Algorithms to Predict Secondary Structures of RNA Macromolecules, in Proc. of 11th International Conference on Industrial and Engineering Applications of Artificial Intelligence and Expert Systems, IEA/AIE'98, Vol. 1 (Benicassim, Castellon, Spain), Springer Lecture Notes in Artificial Intelligence, Springer-Verlag, New York, U.S.A. (Eds.) : (June 1998), p864-875.

7. Chapter in a Book